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yteP [2019-09-20 11:36:43]
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yteP [2019-09-20 11:36:43]

polygalacturonan and rhamnogalacturonan [SW|ABC transporter] (transmembrane lipoprotein)
locus
BSU_30135
pI
9.17
mw
37.00 kDa
protein length
321 aa Sequence Blast
gene length
966 bp Sequence Blast
function
uptake of polygalacturonan and rhamnogalacturonan
product
polygalacturonan and rhamnogalacturonan [SW|ABC transporter] (transmembrane lipoprotein)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,082,260 3,083,225

    The protein

    Protein family

  • [SW|Binding-protein-dependent transport system permease family] (according to UniProt)

    • Paralogous protein(s)

  • [protein|AA19541BCCAE08B48BD23F4E8337EBA220E5C4EF|LplB]

    • Structure

  • [PDB|4TQU] (from Sphingomonas sp., 43% identity) [pubmed|26235029]

    • [SW|Localization]

  • cell membrane [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|4ED1DD17694A06CFDFF48943BAE8AEC2CCCB0401|yteP]-[gene|40787292458E5C6676F9F4F6F34C0D6BD5313DE1|yteR]-[gene|1482FD92CB6DC966263F08AD109769728FC708E4|yteS]-[gene|484D17480DFAD3667E0EBC6D38854A7546A8DB46|yteT]-[gene|103A912E971E5760DBA45CC0681D77CED61D1FED|yteU]-[gene|FCAE9513D764B7A9AAB9C59E6CE1D65C400D4B44|yteV]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A809 (yteP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/809 NBRP B. subtilis, Japan]
  • BKE30135 ([gene|4ED1DD17694A06CFDFF48943BAE8AEC2CCCB0401|yteP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30135 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCCTAGCCTCCTT, downstream forward: _UP4_TAGGAAAGGGATGGGATCAA
  • BKK30135 ([gene|4ED1DD17694A06CFDFF48943BAE8AEC2CCCB0401|yteP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30135 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCCTAGCCTCCTT, downstream forward: _UP4_TAGGAAAGGGATGGGATCAA

    • References

  • 10092453,17449691,29240795,26235029